Topic 16

plant plants arabidopsis biology thaliana root growth leaf genes roots stress mutants leaves accumulation crop expression mutant sentence auxin biosynthesis rice defense under regulation gene responses tolerance photosynthesis development response seed regulated shoot tomato seedlings acid involved photosynthetic transcription transcriptional light wild crops yield stomatal transport wall drought abiotic flowering maize production signaling induced expressed grown water proteins conditions transgenic soil pathway species stresses transcriptome chloroplast developmental aba roles meristem role nicotiana germination hormone vegetative family ros chloroplasts pathogen abscisic ethylene lines metabolism resistance responsive regulatory environmental identified sativa grain benthamiana oxygen wheat physiological factor revealed cytokinin seeds tolerant regulate

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Phosphoproteomics after nitrate treatments reveal an important role for PIN2 phosphorylation in control of root system architecture. 16 9 3

Bipartite influence of abscisic acid on xylem differentiation trajectories is dependent on distinct VND transcription factors in Arabidopsis 16 3

Disruption of CYCLOPHILIN 38 function reveals a photosynthesis-dependent systemic signal controlling lateral root emergence 16 3

The histidine phosphotransfer AHP4 plays a negative role in Arabidopsis plant response to drought 128 16 3

OsNLP4 is required for nitrate assimilation gene expressions and nitrate-dependent growth in rice 16 3

Distinct Cellular Strategies Determine Sensitivity to Mild Drought of Arabidopsis Natural Accessions 16 5 3

Root growth responses to mechanical impedance are regulated by a network of ROS, ethylene and auxin signalling in Arabidopsis. 128 16 3

Genome-wide chromatin binding of transcriptional corepressor Topless-related 1 in Arabidopsis 16 9 3

Cadmium interference with iron sensing reveals transcriptional programs sensitive and insensitive to reactive oxygen species 7 3

TuMV triggers stomatal closure but reduces drought tolerance in Arabidopsis 16 3

Impaired chloroplast positioning affects photosynthetic capacity and regulation of the central carbohydrate metabolism during cold acclimation 117 16 5

Evidences for a nutritional role of iodine in plants 16 3

Cold tolerance in rice plants is partially controlled by root responses 106 16 5

Host auxin machinery is important in mediating root architecture changes induced by Pseudomonas fluorescens GM30 and Serendipita indica 16 3

The mammalian CLU homolog FMT controls development and behavior in Arabidopsis 16 3

Plastid gene expression is required for singlet oxygen-induced chloroplast degradation and cell death 128 16 3

The circadian clock contributes to the long-term water use efficiency of Arabidopsis 159 16

iDePP: a genetically encoded system for the inducible depletion of PI(4,5)P2 in Arabidopsis thaliana. 16 3

Comparative transcriptomics identifies differences in the regulation of the floral transition between Arabidopsis and Brassica rapa cultivars 16 9 5

The tomato DELLA protein PROCERA promotes ABA responses in guard cells by upregulating ABA transporter 16 3

Genetic mapping of the early responses to salt stress in Arabidopsis thaliana 16 9

Momilactone B inhibits Arabidopsis growth and development via disruption of ABA and auxin signaling 16 3

Loss of AUXIN RESPONSE FACTOR 4 function alters plant growth, stomatal functions and improves tomato tolerance to salinity and water deficit 106 16 3

Expression of Castanea crenata Allene Oxide Synthase in Arabidopsis Improves the Defense to Phytophthora cinnamomi 16 3

Multi-omics approach highlights differences between functional RLP classes in Arabidopsis thaliana 134 9 5

Structure-function relationship of Gossypium hirsutum NAC transcription factor, GhNAC4 with regard to ABA and abiotic stress responses 16 3

Unraveling transcription factor functions through integrative inference of transcriptional networks in Arabidopsis thaliana yields novel regulators involved in reactive oxygen species stress signaling 134 31 16 9 4

Aphid feeding induces the relaxation of epigenetic control and the associated regulation of the defense response in Arabidopsis 81 16 9 3

The Streptomyces volatile 3-octanone alters auxin/cytokinin and growth in Arabidopsis thaliana via the gene family KISS ME DEADLY 16 3

The impact of chromatin remodeling on gene expression at the single cell level in Arabidopsis thaliana 43 31 9 3

Transcriptome and translatome changes in germinated pollen under heat stress uncover roles of transporter genes involved in pollen tube growth. 16 9 3

High-resolution temporal transcript profiling during Arabidopsis thaliana gynoecium morphogenesis uncovers the chronology of gene regulatory network activity and reveals novel developmental regulators 16 9 3

Modeling gene regulation in response to wounding: temporal variations, hormonal variations, and specialized metabolism pathways induced by wounding 134 16 9 3

Mitochondrial nucleoid organization and biogenesis of complex I require mTERF18/SHOT1 and ATAD3 in Arabidopsis thaliana. 128 95 16 3

Genome-wide Association Studies Reveal Important Candidate Genes for the Bacillus pumilus TUAT-1-Arabidopsis thaliana Interaction 16 12 5

Ferroportin 3 is a dual-targeted mitochondrial/chloroplast iron exporter necessary for iron homeostasis in Arabidopsis 16 3

Identification of a unique ZIP transporter involved in zinc uptake via the arbuscular mycorrhizal fungal pathway 106 16 3

A role for neutral variation in the evolution of C4 photosynthesis 159 16 5

Arabidopsis thaliana interaction with Ensifer meliloti can support plant growth under N-deficiency 159 16 12 5

Autophagic degradation of the Cucumber mosaic virus virulence factor 2b balances antiviral RNA silencing with proviral plant fitness and virus seed transmission 41 16 3

Loss of rice PARAQUAT TOLERANCE 3 confers enhanced resistance to abiotic stresses and increases grain yield in field 16 3

Quantitative Proteomics and Phosphoproteomics Supports a Role for Mut9-Like Kinases in Multiple Metabolic and Signaling Pathways in Arabidopsis 16 3

Opposing functions of the plant TOPLESS gene family during SNC1-mediated autoimmunity 16 3

Arabidopsis AZG2, an auxin induced putative cytokinin transporter, regulates lateral root emergence 16 3

DNA damage inhibits root growth by enhancing cytokinin biosynthesis in Arabidopsis thaliana. 16 3

Genome-wide predictions of genetic redundancy in Arabidopsis thaliana 134 16 9 5

Evolutionarily Conserved Transcription Factors Drive the Oxidative Stress Response in Drosophila 134 31 9 3

Exogenous Nitro-Oleic Acid inhibits primary root growth by reducing the mitosis in the meristem in Arabidopsis thaliana 16 3

The microtubule-associated protein CLASP is translationally-regulated in light-dependent root apical meristem growth 16 3

A multiple ion-uptake phenotyping platform reveals shared mechanisms that affect nutrient uptake by maize roots 53 16 5

The Genetic Architecture of Leaf Stable Carbon Isotope Composition in Zea mays and the Effect of Transpiration Efficiency on Elemental Accumulation 159 53 16 5

Role of PIF4 and FLC in controlling flowering time under daily variable temperature profile 16 3

Global Dynamic Molecular Profiles of Stomatal Lineage Cell Development by Single-Cell RNA Sequencing 120 9 3

Co-expression networks from gene expression variability between genetically identical seedlings can reveal novel regulatory relationships 134 9 5 4

INTERMEDIUM-C mediates the shade-induced bud growth arrest in barley 16 3

Tomato spotted wilt virus benefits its thrips vector by modulating metabolic and plant defense pathways in tomato 16 12 3

Soil microbiota influences clubroot disease by modulating Plasmodiophora brassicae and Brassica napus transcriptomes 29 16 12 5

Arabidopsis cell wall composition determines disease resistance specificity and fitness 16 3

Altering PRC2 activity partially suppresses ddm1 mutant phenotypes in Arabidopsis 93 81 31 16 9 3

TGN/EE SNARE protein SYP61 is ubiquitinated and required for carbon/nitrogen-nutrient responses in Arabidopsis 16 3

Cold acclimation has a differential effect on leaf vascular bundle structure and carbon export rates in natural Arabidopsis accessions originating from southern and northern Europe 106 16 5

A viral guide RNA delivery system for CRISPR-based transcriptional activation and heritable targeted DNA demethylation in Arabidopsis thaliana 33 16

Role for novel family of pathogen-induced cysteine-rich transmembrane proteins in disease resistance 16 3

The Arabidopsis N-terminal Acetyltransferase NAA50 Regulates Plant Growth and Defense 69 16 3

Mitochondrial fostering: the mitochondrial genome may play a role in plant orphan gene evolution 21 16 5 4

Traceback of Core Transcription Factors for Soybean Root Growth Maintenance under Water Deficit 134 16 3

Epistatic interactions between PHOTOPERIOD-1, CONSTANS 1 and CONSTANS 2 modulate the photoperiodic response in wheat 16 5

The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana. 81 16 3

Phosphorylation-dependent sub-functionalization of the calcium-dependent protein kinase CPK28 102 16 3

CREB-binding protein gene, HAC701, negatively regulates WRKY45-dependent immunity in rice 16 3

Immunocapture of dsRNA-bound proteins provides insight into tobacco rattle virus replication complexes and reveals Arabidopsis DRB2 to be a wide-spectrum antiviral effector 41 16 12

The drought-responsive ZmFDL1 gene regulates cuticle biosynthesis and cuticle-dependent leaf permeability 16 3

Leaf trichome distribution pattern in Arabidopsis reveals gene expression variation associated with environmental adaptation 159 16 5

Perturbations of the AMI1 IAM-amidohydrolase expression trigger plant stress responses in Arabidopsis thaliana 16 3

The conserved plant PM19 protein functions as an osmosensor and regulator of germination 159 16 3

miR156-mediated changes in leaf composition lead to altered photosynthetic traits during vegetative phase change 7 5

Comparative metabolic profile of maize genotypes reveals the tolerance mechanism associated under combined stresses. 106 16 3

A G protein-coupled receptor-like module regulates Cellulose Synthase secretion from the endomembrane system in Arabidopsis 34 16 3

Comparative analysis based on transcriptomics and metabolomics data reveal differences between emmer and durum wheat in response to nitrogen starvation 16 9

Arabidopsis UGT76B1 glycosylates N-hydroxy-pipecolic acid and inactivates systemic acquired resistance in tomato 16 3

Gene expression evolution in pattern-triggered immunity within Arabidopsis thaliana and across Brassicaceae species 134 16 9 5 3

miR156-independent repression of the ageing pathway bylongevity-promoting AHL proteins in Arabidopsis 16 3

Nitric oxide coordinates histone acetylation and expression of genes involved in growth/development and stress response 16 3

Investigation of biochemical changes in barley inoculated with Trichoderma harzianum T-22 under salt stress 106 16 5

Precursor processing by SBT3.8 and phytosulfokine signaling contribute to drought stress tolerance in Arabidopsis 16 3

Contrasting functions of Arabidopsis SUMO1/2 isoforms with SUMO3 intersect to modulate innate immunity and global SUMOylome responses 16 3

Basal leakage in oscillation: coupled transcriptional and translational control using feed-forward loops 16

Widespread targeting of development-related host transcription factors by phytoplasma effectors 143 16 12 9

Natural bacterial assemblages in Arabidopsis thaliana tissues become more distinguishable and diverse during host development 29 17 5

The rice bundle sheath produces reactive oxygen species during high light stress via NADPH oxidase 128 117 16 3

Quantitative imaging of RNA polymerase II activity in plants reveals the single-cell basis of tissue-wide transcriptional dynamics 159 16

Arabidopsis thaliana zinc accumulation in leaf trichomes is correlated with zinc concentration in leaves 106 16

Global RNA sequencing reveals enhanced photosynthetic activity and auxin response in Brassica napus treated with Pseudomonas chlororaphis PA23 106 16 12

EXO70D isoforms mediate selective autophagic degradation of Type-A ARR proteins to regulate cytokinin sensitivity 16 3

Underpinning wheat physiological and molecular responses to co-occurring iron and phosphate deficiency stress 16 3

Addition of Multiple Introns to a Cas9 Gene Results in Dramatic Improvement in Efficiency for Generation of Gene Knockouts in Plants 159 33 16 9

RLP23 is required for Arabidopsis immunity against the grey mould pathogen Botrytis cinerea 128 16 12 3

Shoot and root thermomorphogenesis are linked by a developmental trade-off 16 3

The transcription and export complex THO/TREX contributes to transcription termination in plants 49 16 3

Integration of A Nitrate-Related Signaling Pathway in Rhizobia-Induced Responses During Interactions with Non Legume Host Arabidopsis thaliana 16 3