Topconfects: R package. Top differential expression by confident effect size. A more intuitive way to use "TREAT".
Fitnoise: Python/R. Differential anything analysis with linear models.
Tail-Tools: Analysis pipeline for PAT-Seq data.
Nesoni: Disorganized pile of tools for processing bacterial high-throughput sequencing data.
Plasmodium Autocount and Semiautocount: Cell counting on blood smears.
Publications on Google Scholar.
R more (2016) Course notes introducing R, which I have developed and presented with other members of the Monash Bioinformatics Platform.
Linear models, a practical introduction in R (July 2015) A Jupyter notebook.